Function reference • atlantiscas

All functions
`assign_latlon_ports()`	Assign lat and long to ports
`assign_species_codes()`	assign species codes to atlantis groups
`assign_squid_trips()`	Define trips targeting squid
`assign_unclassified_groups()`	assign unclassified groups to atlantis groups
`compare_data()`	Compare landing from Geret to data used to calibrate atlantis
`create_atlantis_groundfish_data()`	get processed groundfish data for atlantis use
`create_atlantis_scallop_data()`	get processed scallop data for atlantis use
`create_vignette_dataset()`	Filter/create data sets for use in vignettes
`get_effort_landings()`	get effort by port, box, fleet for data sets
`main_data_cleaning()`	Main script to clean data
`plot_nafo()`	Plot NEUS footprint along with NAFO areas
`process_data()`	Process Gerets fleet data. CAMS only
`pull_port_tables()`	Create PortTables
`read_data()`	Read in processed fleet data
`update_atlantis_groups()`	Update Atlantis Species groups using DMIS data

Reference