groundfishLandEffort.Rmd
The NE multispecies (Groundfish) FMP comprises the following species:
Non target species
These GEARCAT(s) associated with groundfish species are:
** Still need to separate some species (sharks) **
The effort variable is Days at sea (DAS) and is a crude metric. Only integer values and rounded up to the nearest whole day. It is the length of the trip.
After aggregating the top ports based on the decisions found in this section {#sel} and combining all remaining ports into an “other fleet” we can look at the total effort by fleet in units: days at sea
Partition effort by box.
Note: In atlantis effort is entered as as daily effort (days of effort per day). This equates to dividing the annual effort by 365 days.
Compare landings used to force model with landings obtained from CAMS for groundfish fleets.
Note: OPT - ocean pout, WOL - wolfish, WPF - windowpane flounder are not target species.
Landings in Atlantis are expressed as milligrams of Nitrogen \(mgNs^{-1}\). Landings data are in metric Tons of wet weight \(mTyr^{-1}\). To convert between the two:
\[ \begin{aligned} \text{1 } mgNs^{-1} &= 60*60*24\text{ }mgNday^{-1} \\ &= 365*60*60*24 \text{ }mgN yr^{-1} \\ &= 31536000 * 20 * 5.7 \text{ }mg yr^{-1} \text{(wetweight)} \\ &= 31536000 *20 * 5.7 * 10^{-9}\text{ }MT{yr}^{-1} \\ &= 3.595104 \text{ }MTyr^{-1} \end{aligned} \]
where wetweight:C = 20 and C:N = 5.7 (These are set as parameter
values in biology.prm as k_wetdry
and X_CN
respectively)