Estimation

Main functions for estimating swept area biomass and stratified mean

calc_swept_area()

Calculate swept area biomass

calc_stratified_mean()

Calculate stratified mean

get_area()

Generate a table of stratum areas

Get Data

Functions that pull data from the SVDBS database

get_survdat_data()

Extracts Survey data from Database

get_survdat_clam_data()

Extracts Clam data from Survey Database

get_survdat_scallop_data()

Extracts Scallop Survey data from Database

get_length_weight_data()

Extract Length and weight data from SVDBS

Helper Functions

Functions that pull supporting information from the SVDBS database

get_cruise_purpose()

Extract CRUISE PURPOSE information from SVDBS

get_maturity()

Extract MATURITY information from SVDBS

get_species()

Extract SPECIES information from SVDBS

get_strata()

Extract STRATA information from SVDBS

get_sex()

Extract SEX information from SVDBS

get_sex_fscs()

Extract SEX information from SVDBS

get_vessel()

Extract VESSEL information from SVDBS

get_conversion_factors()

Extract CONVERSION FACTORS from SVDBS

get_length_weight()

Extract species specific LENGTH-WEIGHT COEFFICIENTS from SVDBS

Sample Data

Random sample of data from different types of data pulls

sampleBio

Sample data pull with spcies specific biological data

sampleLengthWeight

Sample data pull with species lengths and predicted weights

sampleLengths

Sample data pull with species lengths

sampleRaw

Sample raw data pull

sampleRawWithConversion

Sample raw data pull with conversion factors applied

Plotting

Basic plotting functions to visualize data

plot_data_area()

Plots survey data and shapefile

plot_shapefile()

Plots shapefile

Package Info

survdat survdat-package

survdat: Pull and process Survey data