Estimation

Main functions for estimating swept area biomass and stratified mean

calc_swept_area()

Calculate swept area biomass

calc_stratified_mean()

Calculate stratified mean

Intermediate Functions

Functions used in estimation

get_area()

Generate a table of stratum areas

post_strat()

Assigns points to polygon

strat_prep()

Prepare survey data for calculating stratified mean

strat_mean()

Calculate stratified mean biomass and abundance

swept_area()

Calculate the estimate of total biomass and abundance

apply_conversion_factors()

Applies conversion factors to Raw Survey data pull

Get Data

Functions that pull data from the SVDBS database

get_survdat_data()

Extracts Survey data from Database

get_survdat_clam_data()

Extracts Clam data from Survey Database

get_survdat_scallop_data()

Extracts Scallop Survey data from Database

get_length_weight_data()

Extract Length and weight data from SVDBS

Helper Functions

Functions that pull supporting information from the SVDBS database

get_cruise_purpose()

Extract CRUISE PURPOSE information from SVDBS

get_maturity()

Extract MATURITY information from SVDBS

get_species()

Extract SPECIES information from SVDBS

get_strata()

Extract STRATA information from SVDBS

get_sex()

Extract SEX information from SVDBS

get_sex_fscs()

Extract SEX information from SVDBS

get_vessel()

Extract VESSEL information from SVDBS

get_conversion_factors()

Extract CONVERSION FACTORS from SVDBS

get_length_weight()

Generate a table of length weight coefficients

get_length_weight_data()

Extract Length and weight data from SVDBS

Plotting

Basic plotting functions to visualize data

plot_data_area()

Plots survey data and shapefile

plot_shapefile()

Plots shapefile

Package Info

survdat survdat-package

survdat: Pull and process Survey data