Compares the redistribution footprints for groups in the model
Source:R/diag_footprints.R
diag_footprints.RdDetermine if Groups have the sam footprint for timestep redistribution Horizontal redistribution proportions (FXXX_SY and recruit_hdist) and vertical distributions (vertDAY,vertNIGHT, recruit_vdistrib) are used to compare the spatial extent of the groups.
Arguments
- paramList
A list of parameter files (Output of
get_atl_paramfiles())- speciesCodes
A character string of the species/group name of interest. Default is NULL (All species)
Value
A data frame. The columns are:
- group
Species/Group name
- adultJuv
Logical value indicating if the adult and juvenile spatial distributions are the same
- recruitJuv
Logival value indicating if the juvenile and recruit spatial distributions are the same
See also
Other diagnostics:
diag_cohortBiomass(),
diag_fleet_catch(),
diag_maxsize(),
diag_persistence(),
diag_reasonability(),
diag_temp_thresholds()
Examples
if (FALSE) { # \dontrun{
# Declare paths to files required
paramList <- list()
paramList$bgm.file <- "Full path to bgm file"
paramList$biol.prm <- "Full path to biology prm file"
paramList$run.prm <- "Full path to run prm file"
paramList$groups.file <- "Full path to group csv file"
# check for any species that maybe impacted by temperature
diag_footprints(paramList,speciesCodes=NULL)
# check for HERRING and WHITE HAKE
diag_footprints(paramList,speciesCodes=c("HER","WHK"))
} # }