Package index • LeMANS

Running code Main files for running the model and plotting its output
`key_run()`	Key_Run (Length-based Multispecies Analysis by numerical Simulation)
`plot_key_run()`	Plots output from the key_run script
Data Data files included with package, taken from Rochet et al (2011)
`rochet_GB_foodweb`	Foodweb: who eats whom
`rochet_GB_initialValues`	Intitial abundance values
`rochet_GB_modelSetup`	List of species independent parameters
`rochet_GB_parameterValues`	Parameter values used in the model
`rochet_GB_species`	Species descriptions
`LeMANS` `LeMANS-package`	LeMANS: Length-based Multispecies Analysis by Numerical Simulation
Intermediate Intermediate functions called by key_run.
`calc_F()`	Calculate fishing Mortality
`calc_M1()`	Calculates M1 mortality
`calc_M2_c()`	Calculates predation mortality, M2 (C++)
`calc_maturity()`	Calculates Maturity
`calc_phi()`	Calculates the proportion of individuals that leave a size class
`calc_population_growth()`	Calculates the change in the poulation in each time step
`calc_ration()`	Calculate species ration, growth efficiency, and size class weight
`calc_recruits()`	Calculates recruits and spawning stock biomass (SSB)
`calc_sizepref_suitability()`	Calculates size preference and suitabilities

Reference