Fish stock assessment, Fishery catch advice, Ecosystem approach, Multispecies and system advice
Eight regional Fishery Management Councils establish plans for sustainable management of stocks within their jurisdictions. All are governed by the same law, but tailor management to their regional stakeholder needs.
More information: http://www.fisherycouncils.org/
https://www.fisheries.noaa.gov/topic/laws-policies#magnuson-stevens-act
Outline
Systematic approaches using ecosystem information
How can ecosystem information support these decisions?
Word cloud based on Mid-Atlantic Fishery Management Council EAFM Guidance Document
Ecosystem and Socioeconomic Profiles (ESPs) (Shotwell et al., 2022; Haltuch et al., 2020; Tolimieri et al., 2018; Dorn et al., 2020)
Pacific cod example from Alaska: https://www.fisheries.noaa.gov/alaska/2021-alaska-fisheries-science-center-year-review and https://apps-afsc.fisheries.noaa.gov/refm/docs/2021/GOApcod.pdf
Our ESP process was developed from the AFSC process, but we adjusted things slightly because of how our benchmarks are scheduled and because we are providing scientific advice to multiple Councils.
The ESP framework is an iterative cycle that complements the stock assessment cycle. First I will give you an overview of the ESP cycle, and then I will explain each step in more detail. The ESP begins with the development of the problem statement by identifying the topics that the assessment working group and ESP team want to assess. This process includes a literature review or other method of gathering existing information on the stock, such as reviewing prior assessments and research recommendations. Next, a conceptual model is created that links important processes and pressures to stock performance. From these linkages, we develop indicators that can be used to monitor the system conditions. Next, the indicators are analyzed to determine their status and the likely impacts on the stock. Some indicators may be tested for inclusion in assessment models. Finally, all of these analyses are synthesized into a report card to provide general recommendations for fishery management.
Figure and table by Abigail Tyrell
The full ESP document is available as a working paper from the stock assessment data portal
The Bluefish Research Track ESP was presented December 7 2022, and was well received by CIE reviewers. Reviewers commented that it was the most complete treatment of a stock assessment "ecosystem ToR" they had seen, and formed a good basis for integrating further ecosystem information into the stock assessment in the future. The full ESP document is available as a working paper from the stock assessment data portal.
In addition to the conceptual model, a summary table was developed for bluefish ecosystem indicators. This type of summary could contribute to OFL CV decisions with further information on how these indicator levels affect uncertainty in assessment.
"... it is perhaps the most ferocious and bloodthirsty fish in the sea, leaving in its wake a trail of dead and mangled mackerel, menhaden, herring, alewives, and other species on which it preys." (Collette et al., 2002)
Bluefish diet in the Northeast US
Northeast Fisheries Science Center Diet Data Online: https://fwdp.shinyapps.io/tm2020/
We built a spatial "forage index" based on 20 prey groups using stomach contents of 22 predators
Changing distribution and abundance of small pelagics may drive changes in predator distributions, affecting predator availability to fisheries and surveys. However, small pelagic fish are difficult to survey directly, so we developed a novel method of assessing small pelagic fish aggregate abundance via predator diet data. We used piscivore diet data collected from multiple bottom trawl surveys within a Vector Autoregressive Spatio-Temporal (VAST) model to assess trends of small pelagics on the Northeast US shelf. The goal was to develop a spatial “forage index” to inform survey and/or fishery availability in the bluefish (Pomatomus saltatrix) stock assessment. Using spring and fall surveys from 1973-2020, 20 small pelagic groups were identified as major bluefish prey using the diet data. Then, predators were grouped by diet similarity to identify 19 piscivore species with the most similar diet to bluefish in the region. Diets from all 20 piscivores were combined for the 20 prey groups at each surveyed location, and the total weight of small pelagic prey per predator stomach at each location was input into a Poisson-link delta model to estimate expected prey mass per predator stomach. Best fit models included spatial and spatio-temporal random effects, with predator mean length, number of predator species, and sea surface temperature as catchability covariates. Spring and fall prey indices were split into inshore and offshore areas to reflect changing prey availability over time in areas available to the recreational fishery and the bottom trawl survey, and also to contribute to regional ecosystem reporting
Using NEFSC bottom trawl survey diet data from 1973-2021, 20 small pelagic groups were identified as major bluefish prey with 10 or more observations (in descending order of observations): Longfin squids (Doryteuthis formerly Loligo sp.), Anchovy family (Engraulidae), bay anchovy (Anchoa mitchilli), Atlantic butterfish, (Peprilus triachanthus), Cephalopoda, (Anchoa hepsetus), red eye round herring (Etrumeus teres), Sandlance (Ammodytes sp.), scup (Stenotomus chrysops), silver hake (Merluccius bilinearis), shortfin squids (Illex sp.), Atlantic herring (Clupea harengus), Herring family (Clupeidae), Bluefish (Pomatomus saltatrix), silver anchovy (Engraulis eurystole), longfin inshore squid (Doryteuthis pealeii), Atlantic mackerel (Scomber scombrus), flatfish (Pleuronectiformes), weakfish (Cynoscion regalis), and Atlantic menhaden (Brevoortia tyrannus).
Prey categories such as fish unidentified, Osteichthyes, and unidentified animal remains were not included in the prey list. Although unidentified fish and Osteichthyes can comprise a significant portion of bluefish stomach contents, we cannot assume that unidentified fish in other predator stomachs represent unidentified fish in bluefish stomachs.
Image credits: Striped and bay anchovy photo--Robert Aguilar, Smithsonian Environmental Research Center; redeye round herring photo--https://diveary.com ; sandlance photo--Virginia Institute of Marine Science; all others NOAA Fisheries.
A new bluefish stock assessment was implemented using the Woods Hole Assessment Model (WHAM) (Stock et al., 2021) with the forage index as a catchability covariate.
Application of the forage fish index to the recreational catch per angler catchability was successful when implemented as an autoregressive process over the time-series with WHAM estimating the standard error, and led to an overall decreasing trend in catchability over time.
The inclusion of the forage fish index improved the fit of all models.
The recreational index is important in scaling the biomass results, and the lower availability at the end of the time-series led to higher biomass estimates from the assessment including forage fish.
WHAM is a state space stock assessment model framework: https://timjmiller.github.io/wham/
The Bigelow index fit with the fall forage fish index did not improve the model fit (AIC), was slightly worse fit and gave identical results The Albatross index fit with the fall forage fish index did not converge or hessian was not positive definite for any of the models (even when how = 0 for some of them). The MRIP index fit with the annual forage fish index did not converge or hessian was not positive definite for any of the models
slide courtesy Scott Large
Scientific and Statistical Committee (SSC) evaluates 9 criteria
5. Informed by ecosystem factors or comparisons with other species
a. Stock-relevant ecosystem factors directly included in the assessment model, e.g.,:
b. Ecosystem factors outside the stock assessment affecting short term prediction
Decsion Criteria | Default OFL CV = 60% | Default OFL CV = 100% | Default OFL CV = 150% |
---|---|---|---|
Data quality | One or more synoptic surveys over stock area for multiple years. High quality monitoring of landings size and age composition. Long term, precise monitoring of discards. Landings estimates highly accurate. | Low precision synoptic surveys or one or more regional surveys which lack coherency in trend. Age and/or length data available with uncertain quality. Lacking or imprecise discard estimates. Moderate accuracy of landings estimates | No reliable abundance indices. Catch estimates are unreliable. No age and/or length data available or highly uncertain. Natural mortality rates are unknown or suspected to be highly variable. Incomplete or highly uncertain landings estimates |
... | ... | ... | ... |
Ecosystem factors accounted | Assessment considered habitat and ecosystem effects on stock productivity, distribution, mortality and quantitatively included appropriate factors reducing uncertainty in short term predictions. Evidence outside the assessment suggests that ecosystem productivity and habitat quality are stable. Comparable species in the region have synchronous production characteristics and stable short-term predictions. Climate vulnerability analysis suggests low risk of change in productivity due to changing climate. | Assessment considered habitat/ecosystem factors but did not demonstrate either reduced or inflated short-term prediction uncertainty based on these factors. Evidence outside the assessment suggests that ecosystem productivity and habitat quality are variable, with mixed productivity and uncertainty signals among comparable species in the region. Climate vulnerability analysis suggests moderate risk of change in productivity from changing climate. | Assessment either demonstrated that including appropriate ecosystem/habitat factors increases short-term prediction uncertainty, or did not consider habitat and ecosystem factors. Evidence outside the assessment suggests that ecosystem productivity and habitat quality are variable and degrading. Comparable species in the region have high uncertainty in short term predictions. Climate vulnerability analysis suggests high risk of changing productivity from changing climate. |
Diverse stakeholders agreed that an ecosystem approach was necessary. Developing and implementing EAFM is done in collaboration between managers, stakeholders, and scientists. https://www.mafmc.org/eafm
(Gaichas et al., 2016) The Council’s EAFM framework has similarities to the IEA loop. It uses risk assessment as a first step to prioritize combinations of managed species, fleets, and ecosystem interactions for consideration. Second, a conceptual model is developed identifying key environmental, ecological, social, economic, and management linkages for a high-priority fishery. Third, quantitative modeling addressing Council-specified questions and based on interactions identified in the conceptual model is applied to evaluate alternative management strategies that best balance management objectives. As strategies are implemented, outcomes are monitored and the process is adjusted, and/or another priority identified in risk assessment can be addressed.
Ecosystem indicators linked to management objectives (DePiper et al., 2017)
Open science emphasis (Bastille et al., 2021)
Used within Mid-Atlantic Fishery Management Council's Ecosystem Process (Muffley et al., 2021)
Performance relative to management objectives
Seafood production
Profits
Recreational opportunities: Effort
; Effort diversity
Stability: Fishery
; Ecological
Social and cultural, trend not evaluated, status of:
Protected species:
Risks to meeting fishery management objectives
Climate: warming and changing oceanography continue
Other ocean uses: offshore wind development
Climate*: 6 low, 3 low-mod, 4 mod-high, 1 high risk
Multiple drivers with different impacts by species
Seasonal estuarine conditions affect life stages of striped bass, blue crabs, summer flounder, black sea bass differently
Ocean acidification approaching sensitivity thresholds in commercial shellfish habitats
Gulf stream warm core rings more abundant, important to shortfin squid availability
*Climate vulnerability and Distribution Shift risk levels from climate vulnerability analysis (Hare et al., 2016)
DistShift*: 2 low, 9 mod-high, 3 high risk species
New Indicator: protected species shifts
This element is applied at the ecosystem level. Revenue serves as a proxy for commercial profits.
Risk Level | Definition |
---|---|
Low | No trend and low variability in revenue |
Low-Moderate | Increasing or high variability in revenue |
Moderate-High | Significant long term revenue decrease |
High | Significant recent decrease in revenue |
Ranked moderate-high risk due to the significant long term revenue decrease
Key: Black = Revenue of all species combined; Red = Revenue of MAFMC managed species
This element is applied at the ecosystem level. Revenue serves as a proxy for commercial profits.
Risk Level | Definition |
---|---|
Low | No trend and low variability in revenue |
Low-Moderate | Increasing or high variability in revenue |
Moderate-High | Significant long term revenue decrease |
High | Significant recent decrease in revenue |
Ranked moderate-high risk due to the significant long term revenue decrease
Key: Black = Revenue of all species combined; Red = Revenue of MAFMC managed species
SOE Implications: Recent change driven by benthos. Monitor changes in climate and landings drivers:
Species level risk elements
Species | Assess | Fstatus | Bstatus | FW1Pred | FW1Prey | FW2Prey | Climate | DistShift | EstHabitat |
---|---|---|---|---|---|---|---|---|---|
Ocean Quahog | lowest | lowest | lowest | lowest | lowest | lowest | highest | modhigh | lowest |
Surfclam | lowest | lowest | lowest | lowest | lowest | lowest | modhigh | modhigh | lowest |
Summer flounder | lowest | lowest | lowmod | lowest | lowest | lowest | lowmod | modhigh | highest |
Scup | lowest | lowest | lowest | lowest | lowest | lowest | lowmod | modhigh | highest |
Black sea bass | lowest | lowest | lowest | lowest | lowest | lowest | modhigh | modhigh | highest |
Atl. mackerel | lowest | highest | highest | lowest | lowest | lowest | lowmod | modhigh | lowest |
Chub mackerel | highest | lowmod | lowmod | lowest | lowest | lowest | na | na | lowest |
Butterfish | lowest | lowest | lowmod | lowest | lowest | lowest | lowest | highest | lowest |
Longfin squid | lowmod | lowmod | lowmod | lowest | lowest | lowmod | lowest | modhigh | lowest |
Shortfin squid | highest | lowmod | lowmod | lowest | lowest | lowmod | lowest | highest | lowest |
Golden tilefish | lowest | lowest | lowmod | lowest | lowest | lowest | modhigh | lowest | lowest |
Blueline tilefish | highest | highest | modhigh | lowest | lowest | lowest | modhigh | lowest | lowest |
Bluefish | lowest | lowest | lowmod | lowest | lowest | lowest | lowest | modhigh | highest |
Spiny dogfish | lowest | highest | lowmod | lowest | lowest | lowest | lowest | highest | lowest |
Monkfish | highest | lowmod | lowmod | lowest | lowest | lowest | lowest | modhigh | lowest |
Unmanaged forage | na | na | na | lowest | lowmod | lowmod | na | na | na |
Deepsea corals | na | na | na | lowest | lowest | lowest | na | na | na |
Ecosystem level risk elements
System | EcoProd | CommRev | RecVal | FishRes1 | FishRes4 | FleetDiv | Social | ComFood | RecFood |
---|---|---|---|---|---|---|---|---|---|
Mid-Atlantic | lowmod | modhigh | lowest | lowest | modhigh | lowest | lowmod | highest | modhigh |
Species and Sector level risk elements
Species | MgtControl | TecInteract | OceanUse | RegComplex | Discards | Allocation |
---|---|---|---|---|---|---|
Ocean Quahog-C | lowest | lowest | lowmod | lowest | modhigh | lowest |
Surfclam-C | lowest | lowest | lowmod | lowest | modhigh | lowest |
Summer flounder-R | modhigh | lowest | lowmod | modhigh | highest | highest |
Summer flounder-C | lowmod | modhigh | lowmod | modhigh | modhigh | lowest |
Scup-R | lowmod | lowest | lowmod | modhigh | modhigh | highest |
Scup-C | lowest | lowmod | modhigh | modhigh | modhigh | lowest |
Black sea bass-R | highest | lowest | modhigh | modhigh | highest | highest |
Black sea bass-C | highest | lowmod | highest | modhigh | highest | lowest |
Atl. mackerel-R | lowmod | lowest | lowest | lowmod | lowest | lowest |
Atl. mackerel-C | lowest | lowmod | modhigh | highest | lowmod | highest |
Butterfish-C | lowest | lowmod | modhigh | modhigh | modhigh | lowest |
Longfin squid-C | lowest | modhigh | highest | modhigh | highest | lowest |
Shortfin squid-C | lowmod | lowmod | lowmod | modhigh | lowest | highest |
Golden tilefish-R | na | lowest | lowest | lowest | lowest | lowest |
Golden tilefish-C | lowest | lowest | lowest | lowest | lowest | lowest |
Blueline tilefish-R | lowmod | lowest | lowest | lowmod | lowest | lowest |
Blueline tilefish-C | lowmod | lowest | lowest | lowmod | lowest | lowest |
Bluefish-R | lowmod | lowest | lowest | lowmod | modhigh | highest |
Bluefish-C | lowest | lowest | lowmod | lowmod | lowmod | lowest |
Spiny dogfish-R | lowest | lowest | lowest | lowest | lowest | lowest |
Spiny dogfish-C | lowest | modhigh | modhigh | modhigh | lowmod | lowest |
Chub mackerel-C | lowest | lowmod | lowmod | lowmod | lowest | lowest |
Unmanaged forage | lowest | lowest | modhigh | lowest | lowest | lowest |
Deepsea corals | na | na | modhigh | na | na | na |
In this interactive circular graph visualization, model elements identified as important by the Council (through risk assessment) and by the working group (through a range of experience and expertise) are at the perimeter of the circle. Elements are defined in detail in the last section of this page. Relationships between elements are represented as links across the center of the circle to other elements on the perimeter. Links from a model element that affect another element start wide at the base and are color coded to match the category of the element they affect.Hover over a perimeter section (an element) to see all relationships for that element, including links from other elements. Hover over a link to see what it connects. Links by default show text for the two elements and the direction of the relationship (1 for relationship, 0 for no relationship--most links are one direction).For example, hovering over the element "Total Landings" in the full model shows that the working group identified the elements affected by landings as Seafood Production, Recreational Value, and Commercial Profits (three links leading out from landings), and the elements affecting landings as Fluke SSB, Fluke Distributional Shift, Risk Buffering, Management Control, Total Discards, and Shoreside Support (6 links leading into Total Landings).
Results for 2 of 16 performance metrics:
Indicator: fish condition
Indicator: fish productivity anomaly →
Implications: Species in the MAB had mixed condition in 2022. Fish productivity based on surveys and assessments has been below average.
Black line indicates sum where there are the same number of assessments across years.
Reviewed new information and agreed with proposals:
Previous SSC discussion:
What information would be most useful in decision making?
Declining commercial and recreational landings can be driven by many interacting factors, including combinations of ecosystem and stock production, management actions, market conditions, and environmental change. While we cannot evaluate all possible drivers at present, here we evaluate the extent to which ecosystem overfishing (total landings exceeding ecosystem productive capacity), stock status, and system biomass trends may play a role.
Management decisions
Methods and tools
Focus on developing decision processes that are able to use ecosystem information
State of the Ecosystem data on github https://github.com/NOAA-EDAB/ecodata
Bastille, K. et al. (2021). "Improving the IEA Approach Using Principles of Open Data Science". In: Coastal Management 49.1. Publisher: Taylor & Francis _ eprint: https://doi.org/10.1080/08920753.2021.1846155, pp. 72-89. ISSN: 0892-0753. DOI: 10.1080/08920753.2021.1846155. (Visited on Apr. 16, 2021).
Collette, B. B. et al. (2002). Bigelow and Schroeder's Fishes of the Gulf of Maine, Third Edition. 3rd ed. edition. Washington, DC: Smithsonian Books. ISBN: 978-1-56098-951-6.
DePiper, G. S. et al. (2017). "Operationalizing integrated ecosystem assessments within a multidisciplinary team: lessons learned from a worked example". En. In: ICES Journal of Marine Science 74.8, pp. 2076-2086. ISSN: 1054-3139. DOI: 10.1093/icesjms/fsx038. (Visited on Mar. 09, 2018).
DePiper, G. et al. (2021). "Learning by doing: collaborative conceptual modelling as a path forward in ecosystem-based management". In: ICES Journal of Marine Science. ISSN: 1054-3139. DOI: 10.1093/icesjms/fsab054. (Visited on Apr. 15, 2021).
Dorn, M. W. et al. (2020). "A risk table to address concerns external to stock assessments when developing fisheries harvest recommendations". In: Ecosystem Health and Sustainability 6.1. Publisher: Taylor & Francis _ eprint: https://doi.org/10.1080/20964129.2020.1813634, p. 1813634. ISSN: 2096-4129. DOI: 10.1080/20964129.2020.1813634. (Visited on Nov. 20, 2020).
Gaichas, S. K. et al. (2018). "Implementing Ecosystem Approaches to Fishery Management: Risk Assessment in the US Mid-Atlantic". In: Frontiers in Marine Science 5. ISSN: 2296-7745. DOI: 10.3389/fmars.2018.00442. (Visited on Nov. 20, 2018).
Gaichas, S. K. et al. (2016). "A Framework for Incorporating Species, Fleet, Habitat, and Climate Interactions into Fishery Management". In: Frontiers in Marine Science 3. ISSN: 2296-7745. DOI: 10.3389/fmars.2016.00105. (Visited on Apr. 29, 2020).
Haltuch, M. A. et al. (2020). "Oceanographic drivers of petrale sole recruitment in the California Current Ecosystem". En. In: Fisheries Oceanography 29.2. _ eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/fog.12459, pp. 122-136. ISSN: 1365-2419. DOI: 10.1111/fog.12459. (Visited on Mar. 10, 2022).
Hare, J. A. et al. (2016). "A Vulnerability Assessment of Fish and Invertebrates to Climate Change on the Northeast U.S. Continental Shelf". In: PLOS ONE 11.2, p. e0146756. ISSN: 1932-6203. DOI: 10.1371/journal.pone.0146756. (Visited on Mar. 01, 2016).
Muffley, B. et al. (2021). "There Is no I in EAFM Adapting Integrated Ecosystem Assessment for Mid-Atlantic Fisheries Management". In: Coastal Management 49.1. Publisher: Taylor & Francis _ eprint: https://doi.org/10.1080/08920753.2021.1846156, pp. 90-106. ISSN: 0892-0753. DOI: 10.1080/08920753.2021.1846156. (Visited on Apr. 16, 2021).
Shotwell, S. K. et al. (2022). "Synthesizing integrated ecosystem research to create informed stock-specific indicators for next generation stock assessments". En. In: Deep Sea Research Part II: Topical Studies in Oceanography 198, p. 105070. ISSN: 0967-0645. DOI: 10.1016/j.dsr2.2022.105070. (Visited on Dec. 05, 2022).
Stock, B. C. et al. (2021). "The Woods Hole Assessment Model (WHAM): A general state-space assessment framework that incorporates time- and age-varying processes via random effects and links to environmental covariates". En. In: Fisheries Research 240, p. 105967. ISSN: 0165-7836. DOI: 10.1016/j.fishres.2021.105967. (Visited on May. 26, 2021).
Tolimieri, N. et al. (2018). "Oceanographic drivers of sablefish recruitment in the California Current". En. In: Fisheries Oceanography 27.5. _ eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/fog.12266, pp. 458-474. ISSN: 1365-2419. DOI: 10.1111/fog.12266. (Visited on Mar. 10, 2022).
slide courtesy Scott Large
Keyboard shortcuts
↑, ←, Pg Up, k | Go to previous slide |
↓, →, Pg Dn, Space, j | Go to next slide |
Home | Go to first slide |
End | Go to last slide |
Number + Return | Go to specific slide |
b / m / f | Toggle blackout / mirrored / fullscreen mode |
c | Clone slideshow |
p | Toggle presenter mode |
t | Restart the presentation timer |
?, h | Toggle this help |
Esc | Back to slideshow |