Presentation Overview
State of the Ecosystem Overview
Workflow Structure
Cool technique for propagating plots throughout workflow
SOE Overview
State of the Ecosystem Reports
- 2 Annual reports that give ecosystem context to fisheries managers.
- 2 councils, 3 Ecological Production Units
- ~50 Indicator datasets, Over 60 data contributors
- Evolving since 2016
- Supporting products
SOE Workflow Structure
State of the Ecosystem workflow tree
ecodata - R package
ecodata package purpose
- Data Processing
- Data Sharing
- Data Visualization
Data Processing
- Rscipts that format contributor data
Data Sharing
- Data saved in
datafolder - Can be lazyloaded with package
- mtcars
Data Visualization and Propagation
1) Plots built in Visualization.Rmd
Data Visualization and Propagation
2) Rmd Code Chunks converted to Individual R scripts
3) Rscripts stored on github
Data Visualization and Propagation
4) use code = readLines in Rmd
Benefits
Cool Visualization technique
- No copy/paste errors
- All associated products get most up-to-date figure
- Clearly defined tasks for individuals
- Easier to maintain 100+ plots
- Easy to set up and update
Workflow as a whole
- Keeps code and data all in one place
- Processed data available to public
- Can be maintained by anyone
Questions??
