Creates post-processing Catch output for Atlantis

Reads in catch output from catch.nc file by species, fleet, box, time

process_catch_fleet(fishery.prm, catch, groups.file)

Arguments

fishery.prm

string. Path to location of atlantis fishery csv file

catch

string. path to location of atlantis catch output nc file

groups.file

string. path to location of atlantis functional groups csv file

Value

returns a dataframe

species

long species name

fleet

fleet name

polygon

atlantis box/polygon number

time

time step

atoutput

metric tons

Author: Joseph Caracappa