Tools for moving Atlantis files to and from Google drive
Installation
remotes::install_github("NOAA-EDAB/atlantisdrive")Usage
To run Atlantis the command takes on the form like:
atlantisMerged -i neus_init.nc 0 -o neus_output.nc -r at_run.prm -f at_force_LINUX.prm
-p at_physics.prm -b at_biology.prm -h at_harvest.prm -e at_economics.prm -s neus_groups.csv
-q neus_fisheries.csv -t . -d outputwhere neus_output.nc is the main output file. The prefix neus_output is prepended to all Atlantis output files.
library(atlantisdrive)To view the list of files/folders under the root folder (as defined by id) on Google drive use
get_file_list()
get_file_list(targetDir = "Development")
get_file_list(targetDir = "Development/Example")To pull all files containing the string “ATLNT” from the “Development” folder to your local machine (Note: partial matches to file names are allowed)
pull_from_drive(localPath=here::here(),fileList="ATLNT",googledriveFolder="Development")To push all files from your “output” folder in your current working directory to the “Testing/Example” folder on Google drive (Note: partial matches to file names are allowed). All files are overwritten.
push_to_drive(id=NULL, localPath=here::here("output"), fileList=NULL, googledriveFolder="Testing/Example", rootid=atlantisdrive::rootid, overwrite = TRUE)Note: special case when fileList = NULL. All Atlantis core files are pushed.
To push all files containing the string “xml” from your “output” folder in your current working directory to the “Testing/Example” folder on Google drive. Appends the string “climate” to beginning of all files
push_to_drive(id="climate", localPath=here::here("output"), fileList="xml", googledriveFolder="Testing/Example", rootid=atlantisdrive::rootid, overwrite = TRUE)Contact
| andybeet |
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Contributors (alphabetical order)
| jcaracappa1 | sgaichas | gambler1650 | slarge |
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Legal disclaimer
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