Creates post-processing Catch output for Atlantis — process_catch_fleet • atlantisdiagnostics

Reads in catch output from catch.nc file by species, fleet, box, time

Usage

process_catch_fleet(fishery.prm, catch, groups.file)

Arguments

fishery.prm: string. Path to location of atlantis fishery csv file
catch: string. path to location of atlantis catch output nc file
groups.file: string. path to location of atlantis functional groups csv file

Value

returns a dataframe

species: long species name
fleet: fleet name
polygon: atlantis box/polygon number
time: time step
atoutput: metric tons

Author: Joseph Caracappa